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|
Date |
Topic/Plan |
Readings, assignments, and due dates |
1 |
9/3/15 |
COMSOL installation and exercises (ALSS not here) |
Exercise 1 handed out (revised Exercise 1) |
|
9/7/15 |
Labor Day - no class |
|
2 |
9/10/15 |
Overview of class
Diffusion constants and Fick's law
Overview of Drosophila development |
Read Truskey Chapter 1 (skim), Chapter 6
Exercise 2 handed out |
3 |
9/14/15 |
Discussion of Gregor and Castle papers
More Diffusion
|
Gregor paper and Castle paper
(2007 Gregor paper)
Exercise 1 due in class
Case Study 1 handed out |
4 |
9/17/15 |
COMSOL training 9:30-12:30
(Olin Monday) |
Register for the workshop and install COMSOL on your computer. |
5 |
9/21/15 |
Case Study 1 working day |
|
6 |
9/24/15 |
Exercise 2 working day |
Case Study 1 Draft Due
Case Study 2 handed out |
7 |
9/28/15 |
Case Study 2 working day -- planning |
|
8 |
10/1/15 |
Case Study 2 working day -- lab |
Case Study 1 Due |
9 |
10/5/15 |
intro to fluids, kinematics and rheology, mass and momentum balances |
Read Truskey Chapter 2 (skim 2.4-2.6, 2.8)
Exercise 2 due |
10 |
10/8/15 |
Case Study 2 working day -- lab |
|
| |
10/12/15 |
Columbus Day, no class |
Draft of Case Study 1 returned |
11 |
10/15/15 |
Navier-Stokes equations
(Olin Monday) |
Read Truskey Chapter 3
Case Study 2 Draft Due
Exercise 3 handed out |
12 |
10/19/15 |
Flow through porous media |
Read Truskey Chapters: 8 Skim: 10.2, 15
|
13 |
10/22/15 |
Exercise 3 working day, discussion of more key concepts and specific applications |
Case Study 2 Due
|
14 |
10/26/15 |
Transport in tumors: classic papers |
Transport of Fluid and Macromolecules in Tumors I
Transport of Fluid and Macromolecules in Tumors III
Case Study 3 handed out |
15 |
10/29/15 |
Case Study 3 Working Day |
Exercise 3 Due |
16 |
11/2/15 |
Case Study 3 Working Day |
|
17 |
11/5/15 |
Case Study 3 Working Day |
Bring potential papers for 11/7 and 11/11 to discuss |
18 |
11/9/15 |
Paper presentations on interesting transport topics |
Presentations
Case Study 3 Draft due |
19 |
11/2/15 |
Exercise 4 working day |
Presentations
Exercise 4 handed out |
20 |
11/13/15 |
No class
(Olin Monday) |
|
21 |
11/16/07 |
Read and discuss paper on models of tumor angiogenesis |
Mathematical modelling of dynamica adaptive tumour-induced angiogenesis
(Optional original model paper for background: <Continuous and discrete mathematical models of tumour-induced angiogenesis)
Case Study 3 Due |
22 |
11/19/15 |
Tumor angiogenesis model discussion continued |
Exercise 4 due
Case Study 4 handed out |
|
|
Thanksgiving Break! |
|
23 |
11/30/15 |
Case Study 4 Working Day |
Exercise 5 handed out |
24 |
12/3/15 |
Case Study 4 / Exercise 5 Working Day |
|
25 |
12/7/15 |
Case Study 4 Working Day |
|
26 |
12/10/15 |
Case Study 4 Working Day |
Exercise 5 due |
| |
TBA |
Case Study 4presentations |
Presentations |
